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Selection of protocols & methods we frequently use

ChIP, RT-qPCR and RNA-seq

  • ChIP
  • RT-qPCR
  • cDNA library for RNAseq
  • RNAseq analysis with Galaxy

Live-cell imaging

  • Pombe microscopy (agarose pads)
  • Pombe microscopy (sample preparation, imaging, analysis)

Ubiquitin pulldown and protein extracts

  • Ni-Ub pulldown under denat. conditions
  • Protein extraction w/ NaOH/TCA
  • Preparation of chromatin-enriched fraction

Large-scale protein purification of chromatin-associated proteins

  • Large-scale IP for MS
  • Small-scale IP
  • co-IP

Large-scale protein purification of chromatin-associated proteins

  • Cloning & PCR

    • Sequence- & ligation-independent cloning (SLIC)
    • Primer design for KOs, tagging and qPCR
    • Perl script for KO primers (coming soon)

     

    Yeast methods

    • Yeast transformation
    • Pombe transformation
    • Random spore analysis
    • Colony PCR w zymolyase
    • Yeast DNA prep (‘smash & grab’)
    • large-scale genomic DNA preparation
    • Yeast plating assays with pin-frogger (serial dilutions)

     

    SGA with Singer RoToR HDA

    • RoToR SGA protocol for S. pombe
    • Plates & pads cleaning

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